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Raw Signal Density Graphs of Small Intestine H3K27ac ChIP-Seq Data
Illumina H3K27ac ChIP-Seq read mappings from Small Intestine, Donor STL001, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/7/9:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K27ac.STL001SB.01.01.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Small_Intestine.H3K27ac.STL001.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: SI H3K27ac 01 23
BROWSER_TRACK_DESCRIPTION: UCSD Small Intestine Histone H3K27ac Donor STL001 Library AK223 EA Release 8
NUMBER_OF_MAPPED_READS: 31,098,865
NUMBER_OF_H3K27ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21
FINDPEAKS_SCORE: 0.4865
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.5146
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9973
IROC_PERCENTILE: 57
POISSON_SCORE: 0.5764
POISSON_PERCENTILE: 71
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Small_Intestine.H3K27ac.STL001.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: SI H3K27ac 01 23
BROWSER_TRACK_DESCRIPTION: UCSD Small Intestine Histone H3K27ac Donor STL001 Library AK223 EA Release 8
NUMBER_OF_MAPPED_READS: 31,098,865
NUMBER_OF_H3K27ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21
FINDPEAKS_SCORE: 0.4865
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.5146
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9973
IROC_PERCENTILE: 57
POISSON_SCORE: 0.5764
POISSON_PERCENTILE: 71
MAXIMUM_REPLICATE_CORRELATION: NA
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