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Raw Signal Density Graphs of Gastric H3K4me1 ChIP-Seq Data
Illumina H3K4me1 ChIP-Seq read mappings from Gastric, Donor STL003, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/7/9:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me1.STL003GA.01.01.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Gastric.H3K4me1.STL003.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: Gastric H3K4me1 03 87
BROWSER_TRACK_DESCRIPTION: UCSD Gastric Histone H3K4me1 Donor STL003 Library AY187 EA Release 8
NUMBER_OF_MAPPED_READS: 25,227,243
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 12
FINDPEAKS_SCORE: 0.1285
FINDPEAKS_PERCENTILE: 25
HOTSPOT_SCORE: 0.2542
HOTSPOT_PERCENTILE: 25
IROC_SCORE: 0.8917
IROC_PERCENTILE: 17
POISSON_SCORE: 0.4076
POISSON_PERCENTILE: 25
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Gastric.H3K4me1.STL003.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: Gastric H3K4me1 03 87
BROWSER_TRACK_DESCRIPTION: UCSD Gastric Histone H3K4me1 Donor STL003 Library AY187 EA Release 8
NUMBER_OF_MAPPED_READS: 25,227,243
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 12
FINDPEAKS_SCORE: 0.1285
FINDPEAKS_PERCENTILE: 25
HOTSPOT_SCORE: 0.2542
HOTSPOT_PERCENTILE: 25
IROC_SCORE: 0.8917
IROC_PERCENTILE: 17
POISSON_SCORE: 0.4076
POISSON_PERCENTILE: 25
MAXIMUM_REPLICATE_CORRELATION: NA
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