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Raw Signal Density Graphs of Left Ventricle H3K4me3 ChIP-Seq Data
Illumina H3K4me3 ChIP-Seq read mappings from Left Ventricle, Donor STL003, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/7/9:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me3.STL003LV.01.01.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Left_Ventricle.H3K4me3.STL003.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: LV H3K4me3 03 36
BROWSER_TRACK_DESCRIPTION: UCSD Left Ventricle Histone H3K4me3 Donor STL003 Library AY136 EA Release 8
NUMBER_OF_MAPPED_READS: 18,157,625
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.4776
FINDPEAKS_PERCENTILE: 79
HOTSPOT_SCORE: 0.5071
HOTSPOT_PERCENTILE: 79
IROC_SCORE: 0.9998
IROC_PERCENTILE: 67
POISSON_SCORE: 0.4959
POISSON_PERCENTILE: 79
MAXIMUM_REPLICATE_CORRELATION: 0.97
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Left_Ventricle.H3K4me3.STL003.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: LV H3K4me3 03 36
BROWSER_TRACK_DESCRIPTION: UCSD Left Ventricle Histone H3K4me3 Donor STL003 Library AY136 EA Release 8
NUMBER_OF_MAPPED_READS: 18,157,625
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.4776
FINDPEAKS_PERCENTILE: 79
HOTSPOT_SCORE: 0.5071
HOTSPOT_PERCENTILE: 79
IROC_SCORE: 0.9998
IROC_PERCENTILE: 67
POISSON_SCORE: 0.4959
POISSON_PERCENTILE: 79
MAXIMUM_REPLICATE_CORRELATION: 0.97
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