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Raw Signal Density Graphs of Sigmoid Colon H3K27me3 ChIP-Seq Data
Illumina H3K27me3 ChIP-Seq read mappings from Sigmoid Colon, Donor STL001, were processed into density graphs of raw signal representing the aligned read density.


Project News:
2012/7/9:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded



alias: renlab.H3K27me3.STL001SG.01.01.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Sigmoid_Colon.H3K27me3.STL001.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: SC H3K27me3 01 30
BROWSER_TRACK_DESCRIPTION: UCSD Sigmoid Colon Histone H3K27me3 Donor STL001 Library AK230 EA Release 8
NUMBER_OF_MAPPED_READS: 28,105,704
NUMBER_OF_H3K27me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 19
FINDPEAKS_SCORE: 0.0208
FINDPEAKS_PERCENTILE: 37
HOTSPOT_SCORE: 0.1442
HOTSPOT_PERCENTILE: 37
IROC_SCORE: 0.7158
IROC_PERCENTILE: 13
POISSON_SCORE: 0.3256
POISSON_PERCENTILE: 53
MAXIMUM_REPLICATE_CORRELATION: 0.97

 

 


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