|
|
| Home | Browser | Tools | Log Out |
Help
|
Raw Signal Density Graphs of Adrenal Gland H3K9me3 ChIP-Seq Data
Illumina H3K9me3 ChIP-Seq read mappings from Adrenal Gland, Donor STL003, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/7/9:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K9me3.STL003AD.01.01.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Adrenal_Gland.H3K9me3.STL003.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: AG H3K9me3 03 80
BROWSER_TRACK_DESCRIPTION: UCSD Adrenal Gland Histone H3K9me3 Donor STL003 Library AY180 EA Release 8
NUMBER_OF_MAPPED_READS: 15,464,751
NUMBER_OF_H3K9me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 16
FINDPEAKS_SCORE: 0.093
FINDPEAKS_PERCENTILE: 25
HOTSPOT_SCORE: 0.2697
HOTSPOT_PERCENTILE: 56
IROC_SCORE: 0.8388
IROC_PERCENTILE: 31
POISSON_SCORE: 0.4234
POISSON_PERCENTILE: 56
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.Adrenal_Gland.H3K9me3.STL003.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: AG H3K9me3 03 80
BROWSER_TRACK_DESCRIPTION: UCSD Adrenal Gland Histone H3K9me3 Donor STL003 Library AY180 EA Release 8
NUMBER_OF_MAPPED_READS: 15,464,751
NUMBER_OF_H3K9me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 16
FINDPEAKS_SCORE: 0.093
FINDPEAKS_PERCENTILE: 25
HOTSPOT_SCORE: 0.2697
HOTSPOT_PERCENTILE: 56
IROC_SCORE: 0.8388
IROC_PERCENTILE: 31
POISSON_SCORE: 0.4234
POISSON_PERCENTILE: 56
MAXIMUM_REPLICATE_CORRELATION: NA
|
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Code is available
free for academic use.
|
|
|
© 2001-2013 Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030, 713-798-5433) |
|