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Raw Signal Density Graphs of Sigmoid Colon H3K27ac ChIP-Seq Data
Illumina H3K27ac ChIP-Seq read mappings from Sigmoid Colon, Donor STL003, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/7/9: ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K27ac.STL003SG.01.01.hg19.level.2.release.8
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSD.Sigmoid_Colon.H3K27ac.STL003.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 8 BROWSER_TRACK_NAME: SC H3K27ac 03 94 BROWSER_TRACK_DESCRIPTION: UCSD Sigmoid Colon Histone H3K27ac Donor STL003 Library AY94 EA Release 8 NUMBER_OF_MAPPED_READS: 20,307,929 NUMBER_OF_H3K27ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21 FINDPEAKS_SCORE: 0.5321 FINDPEAKS_PERCENTILE: 81 HOTSPOT_SCORE: 0.5599 HOTSPOT_PERCENTILE: 81 IROC_SCORE: 0.9984 IROC_PERCENTILE: 81 POISSON_SCORE: 0.5936 POISSON_PERCENTILE: 76 MAXIMUM_REPLICATE_CORRELATION: 0.97 |
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