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Raw Signal Density Graphs of Left Ventricle Input ChIP-Seq Data
Illumina Input ChIP-Seq read mappings from Left Ventricle, Donor STL001, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/7/9: ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.Input.STL001LV.01.01.hg19.level.2.release.8
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSD.Left_Ventricle.Input.STL001.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 8 BROWSER_TRACK_NAME: LV Input 01 37 BROWSER_TRACK_DESCRIPTION: UCSD Left Ventricle ChIP-Seq Input Donor STL001 Library AK237 EA Release 8 NUMBER_OF_MAPPED_READS: 46,049,267 NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 19 FINDPEAKS_SCORE: 0.0077 FINDPEAKS_PERCENTILE: 74 HOTSPOT_SCORE: 0.0921 HOTSPOT_PERCENTILE: 58 IROC_SCORE: 0.6551 IROC_PERCENTILE: 53 POISSON_SCORE: 0.2704 POISSON_PERCENTILE: 68 MAXIMUM_REPLICATE_CORRELATION: 0.98 |
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