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Mapping of Small Intestine Input ChIP-Seq Data
Illumina reads produced by Input ChIP-Seq on Small Intestine, Donor STL001, were mapped to the human genome using Pash.
Project News:
2012/7/9: ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded
alias: renlab.Input.STL001SB.01.01.hg19.level.1.release.8
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSD.Small_Intestine.Input.STL001.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 8 NUMBER_OF_MAPPED_READS: 34,464,193 NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 19 FINDPEAKS_SCORE: 0.0071 FINDPEAKS_PERCENTILE: 58 HOTSPOT_SCORE: 0.0517 HOTSPOT_PERCENTILE: 42 IROC_SCORE: NA IROC_PERCENTILE: NA POISSON_SCORE: 0.1564 POISSON_PERCENTILE: 53 MAXIMUM_REPLICATE_CORRELATION: NA |
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