Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Mapping of Sigmoid Colon H3K27me3 ChIP-Seq Data
Illumina reads produced by H3K27me3 ChIP-Seq on Sigmoid Colon, Donor STL001, were mapped to the human genome using Pash.


Project News:
2012/7/9:
ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded



alias: renlab.H3K27me3.STL001SG.01.01.hg19.level.1.release.8
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.Sigmoid_Colon.H3K27me3.STL001.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 28,105,704
NUMBER_OF_H3K27me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 19
FINDPEAKS_SCORE: 0.0208
FINDPEAKS_PERCENTILE: 37
HOTSPOT_SCORE: 0.1442
HOTSPOT_PERCENTILE: 37
IROC_SCORE: 0.7158
IROC_PERCENTILE: 13
POISSON_SCORE: 0.3256
POISSON_PERCENTILE: 53
MAXIMUM_REPLICATE_CORRELATION: 0.97

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)