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Mapping of Left Ventricle H3K27ac ChIP-Seq Data
Illumina reads produced by H3K27ac ChIP-Seq on Left Ventricle, Donor STL003, were mapped to the human genome using Pash.
Project News:
2012/7/9: ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded
alias: renlab.H3K27ac.STL003LV.01.01.hg19.level.1.release.8
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSD.Left_Ventricle.H3K27ac.STL003.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 8 NUMBER_OF_MAPPED_READS: 8,619,533 NUMBER_OF_H3K27ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21 FINDPEAKS_SCORE: 0.6255 FINDPEAKS_PERCENTILE: 90 HOTSPOT_SCORE: 0.6545 HOTSPOT_PERCENTILE: 95 IROC_SCORE: 0.9985 IROC_PERCENTILE: 86 POISSON_SCORE: 0.6692 POISSON_PERCENTILE: 90 MAXIMUM_REPLICATE_CORRELATION: 0.89 |
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