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Mapping of Lung H3K4me1 ChIP-Seq Data
Illumina reads produced by H3K4me1 ChIP-Seq on Lung, Donor STL002, were mapped to the human genome using Pash.
Project News:
2012/7/9:
ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded
alias: renlab.H3K4me1.STL002LG.01.01.hg19.level.1.release.8
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.Lung.H3K4me1.STL002.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 14,325,307
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 12
FINDPEAKS_SCORE: 0.4311
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.5072
HOTSPOT_PERCENTILE: 75
IROC_SCORE: 0.978
IROC_PERCENTILE: 58
POISSON_SCORE: 0.5868
POISSON_PERCENTILE: 75
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.Lung.H3K4me1.STL002.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 14,325,307
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 12
FINDPEAKS_SCORE: 0.4311
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.5072
HOTSPOT_PERCENTILE: 75
IROC_SCORE: 0.978
IROC_PERCENTILE: 58
POISSON_SCORE: 0.5868
POISSON_PERCENTILE: 75
MAXIMUM_REPLICATE_CORRELATION: NA
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