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Raw Signal Density Graphs of hESC Derived CD56+ Mesoderm Cultured Cells H3K4me3 ChIP-Seq Data
Illumina H3K4me3 ChIP-Seq read mappings from the hESC Derived CD56+ Mesoderm Cultured Cells, Library DNA_Lib 1273, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/7/5:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 1273-DNA_Lib 1273.hg19.level.2.release.6
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.hESC_Derived_CD56+_Mesoderm_Cultured_Cells.H3K4me3.DNA_Lib_1273.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: hDCM H3K4me3 73
BROWSER_TRACK_DESCRIPTION: BI hESC Derived CD56+ Mesoderm Cultured Cells Histone H3K4me3 Library DNA_Lib 1273 EA Release 8
NUMBER_OF_MAPPED_READS: 5,874,078
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.7889
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.7952
HOTSPOT_PERCENTILE: 93
IROC_SCORE: NA
IROC_PERCENTILE: NA
POISSON_SCORE: 0.7969
POISSON_PERCENTILE: 93
MAXIMUM_REPLICATE_CORRELATION: 0.56
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.hESC_Derived_CD56+_Mesoderm_Cultured_Cells.H3K4me3.DNA_Lib_1273.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: hDCM H3K4me3 73
BROWSER_TRACK_DESCRIPTION: BI hESC Derived CD56+ Mesoderm Cultured Cells Histone H3K4me3 Library DNA_Lib 1273 EA Release 8
NUMBER_OF_MAPPED_READS: 5,874,078
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.7889
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.7952
HOTSPOT_PERCENTILE: 93
IROC_SCORE: NA
IROC_PERCENTILE: NA
POISSON_SCORE: 0.7969
POISSON_PERCENTILE: 93
MAXIMUM_REPLICATE_CORRELATION: 0.56
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