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Raw Signal Density Graphs of H1 Derived Mesenchymal Stem Cells ChromatinAccessibility Data
Illumina DNAse-Seq read mappings from the H1 Derived Mesenchymal Stem Cells, Library DS20671 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/7/2:
ANALYSIS XML file 'uw.chromatin.accessibility.level.2.xml' uploaded
alias: DS20671.hg19.level.2.release.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.H1_Derived_Mesenchymal_Stem_Cells.ChromatinAccessibility.DS20671.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 150bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: HDMSC DNase 71
BROWSER_TRACK_DESCRIPTION: UW H1 Derived Mesenchymal Stem Cells DNase Hypersensitivity Library DS20671 EA Release 8
NUMBER_OF_MAPPED_READS: 37,839,693
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.4814
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.5087
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9967
IROC_PERCENTILE: 100
POISSON_SCORE: 0.5279
POISSON_PERCENTILE: 67
MAXIMUM_REPLICATE_CORRELATION: 0.98
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.H1_Derived_Mesenchymal_Stem_Cells.ChromatinAccessibility.DS20671.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 150bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 8
BROWSER_TRACK_NAME: HDMSC DNase 71
BROWSER_TRACK_DESCRIPTION: UW H1 Derived Mesenchymal Stem Cells DNase Hypersensitivity Library DS20671 EA Release 8
NUMBER_OF_MAPPED_READS: 37,839,693
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.4814
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.5087
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9967
IROC_PERCENTILE: 100
POISSON_SCORE: 0.5279
POISSON_PERCENTILE: 67
MAXIMUM_REPLICATE_CORRELATION: 0.98
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