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Mapping of H1 Derived Mesenchymal Stem Cells ChromatinAccessibility Data
Illumina reads produced by DNAse-Seq on the H1 Derived Mesenchymal Stem Cells, Library DS20671 were mapped to the human genome using Pash.
Project News:
2012/7/2: ANALYSIS XML file 'uw.chromatin.accessibility.level.1.xml' uploaded
alias: DS20671.hg19.level.1.release.8
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UW.H1_Derived_Mesenchymal_Stem_Cells.ChromatinAccessibility.DS20671.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: Chromatin Accessibility GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 8 NUMBER_OF_MAPPED_READS: 37,839,693 NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3 FINDPEAKS_SCORE: 0.4814 FINDPEAKS_PERCENTILE: 67 HOTSPOT_SCORE: 0.5087 HOTSPOT_PERCENTILE: 67 IROC_SCORE: 0.9967 IROC_PERCENTILE: 100 POISSON_SCORE: 0.5279 POISSON_PERCENTILE: 67 MAXIMUM_REPLICATE_CORRELATION: 0.98 |
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