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Mapping of H1 Derived Neuronal Progenitor Cultured Cells ChromatinAccessibility Data
Illumina reads produced by DNAse-Seq on the H1 Derived Neuronal Progenitor Cultured Cells, Library DS20153 were mapped to the human genome using Pash.
Project News:
2012/7/2:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.xml' uploaded
alias: DS20153.hg19.level.1.release.8
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.H1_Derived_Neuronal_Progenitor_Cultured_Cells.ChromatinAccessibility.DS20153.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 45,984,280
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.2487
FINDPEAKS_PERCENTILE: 33
HOTSPOT_SCORE: 0.2482
HOTSPOT_PERCENTILE: 33
IROC_SCORE: 0.996
IROC_PERCENTILE: 67
POISSON_SCORE: 0.3223
POISSON_PERCENTILE: 33
MAXIMUM_REPLICATE_CORRELATION: 0.98
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.H1_Derived_Neuronal_Progenitor_Cultured_Cells.ChromatinAccessibility.DS20153.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 8
NUMBER_OF_MAPPED_READS: 45,984,280
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.2487
FINDPEAKS_PERCENTILE: 33
HOTSPOT_SCORE: 0.2482
HOTSPOT_PERCENTILE: 33
IROC_SCORE: 0.996
IROC_PERCENTILE: 67
POISSON_SCORE: 0.3223
POISSON_PERCENTILE: 33
MAXIMUM_REPLICATE_CORRELATION: 0.98
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