|
|
| Home | Browser | Tools | Log Out |
Help
|
Methylation Proportion Graphs of H1 BMP4 Derived Mesendoderm Cultured Cells Bisulfite-Seq Data
Illumina Bisulfite-Seq read mappings from the H1 BMP4 Derived Mesendoderm Cultured Cells, Library methylC-seq_h1_mesendoderm_r1b were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads. Reads from the + and - strands were combined for methylation proportion calculations.
Project News:
2012/6/5:
ANALYSIS XML file 'ucsd.bisulfite-seq.level.2.xml' uploaded
alias: methylC-seq_h1-mesendoderm_r1b.hg19.level.2.release.7
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.Bisulfite-Seq.methylC-seq_h1_mesendoderm_r1b.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 7
BROWSER_TRACK_NAME: HBDM BS 1b
BROWSER_TRACK_DESCRIPTION: UCSD H1 BMP4 Derived Mesendoderm Cultured Cells Bisulfite-Seq Library methylC-seq_h1_mesendoderm_r1b EA Release 7
NUMBER_OF_MAPPED_READS: 231,518,888
NUMBER_OF_Bisulfite-Seq_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 6
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 98.42
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 33
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.Bisulfite-Seq.methylC-seq_h1_mesendoderm_r1b.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 7
BROWSER_TRACK_NAME: HBDM BS 1b
BROWSER_TRACK_DESCRIPTION: UCSD H1 BMP4 Derived Mesendoderm Cultured Cells Bisulfite-Seq Library methylC-seq_h1_mesendoderm_r1b EA Release 7
NUMBER_OF_MAPPED_READS: 231,518,888
NUMBER_OF_Bisulfite-Seq_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 6
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 98.42
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 33
|
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Code is available
free for academic use.
|
|
|
© 2001-2013 Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030, 713-798-5433) |
|