Methylation Proportion Graphs of H1 Derived Mesenchymal Stem Cells Bisulfite-Seq Data
Illumina Bisulfite-Seq read mappings from the H1 Derived Mesenchymal Stem Cells, Library methylC-seq_h1-msc_r1a were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads. Reads from the + and - strands were combined for methylation proportion calculations.
ANALYSIS XML file 'ucsd.bisulfite-seq.level.2.xml' uploaded
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_Derived_Mesenchymal_Stem_Cells.Bisulfite-Seq.methylC-seq_h1-msc_r1a.wig
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 2bp containing CpGs
RELEASE_NUMBER: Human Epigenome Atlas 7
BROWSER_TRACK_NAME: HDMSC BS 1a
BROWSER_TRACK_DESCRIPTION: UCSD H1 Derived Mesenchymal Stem Cells Bisulfite-Seq Library methylC-seq_h1-msc_r1a EA Release 7