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Mapping of Penis Foreskin Keratinocyte Primary Cells MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on Penis Foreskin Keratinocyte Primary Cells, Donor skin02 were mapped to the human genome using Pash.
Project News:
2012/5/31:
ANALYSIS XML file 'ucsf-ubc.medip.level.1.xml' uploaded
alias: A09692-1-A08303-1.hg19.level.1.release.7
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Penis_Foreskin_Keratinocyte_Primary_Cells.MeDIP-Seq.skin02.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 7
NUMBER_OF_MAPPED_READS: 100,523,225
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.4857
FINDPEAKS_PERCENTILE: 33
HOTSPOT_SCORE: 0.5104
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9844
IROC_PERCENTILE: 33
POISSON_SCORE: 0.5778
POISSON_PERCENTILE: 33
MAXIMUM_REPLICATE_CORRELATION: 0.96
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Penis_Foreskin_Keratinocyte_Primary_Cells.MeDIP-Seq.skin02.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 7
NUMBER_OF_MAPPED_READS: 100,523,225
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.4857
FINDPEAKS_PERCENTILE: 33
HOTSPOT_SCORE: 0.5104
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9844
IROC_PERCENTILE: 33
POISSON_SCORE: 0.5778
POISSON_PERCENTILE: 33
MAXIMUM_REPLICATE_CORRELATION: 0.96
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