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Raw Signal Density Graphs of Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K36me3 ChIP-Seq Data
Illumina Histone H3K36me3 ChIP-Seq read mappings from Neurosphere Cultured Cells Ganglionic Eminence Derived, Donor HuFNSC01 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/5/31:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: A03279-1.hg19.level.2.release.7
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K36me3.HuFNSC01.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 7
BROWSER_TRACK_NAME: NGED H3K36me3 01 79
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K36me3 Donor HuFNSC01 Library A03279 EA Release 7
NUMBER_OF_MAPPED_READS: 86,425,113
NUMBER_OF_H3K36me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 5
FINDPEAKS_SCORE: 0.1413
FINDPEAKS_PERCENTILE: 40
HOTSPOT_SCORE: 0.1738
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 0.9465
IROC_PERCENTILE: 40
POISSON_SCORE: 0.4992
POISSON_PERCENTILE: 60
MAXIMUM_REPLICATE_CORRELATION: 0.96
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.H3K36me3.HuFNSC01.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 7
BROWSER_TRACK_NAME: NGED H3K36me3 01 79
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Neurosphere Cultured Cells Ganglionic Eminence Derived Histone H3K36me3 Donor HuFNSC01 Library A03279 EA Release 7
NUMBER_OF_MAPPED_READS: 86,425,113
NUMBER_OF_H3K36me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 5
FINDPEAKS_SCORE: 0.1413
FINDPEAKS_PERCENTILE: 40
HOTSPOT_SCORE: 0.1738
HOTSPOT_PERCENTILE: 40
IROC_SCORE: 0.9465
IROC_PERCENTILE: 40
POISSON_SCORE: 0.4992
POISSON_PERCENTILE: 60
MAXIMUM_REPLICATE_CORRELATION: 0.96
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