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Mapping of Penis Foreskin Fibroblast Primary Cells Histone H3K4me1 ChIP-Seq Data
Illumina reads produced by Histone H3K4me1 ChIP-Seq on Penis Foreskin Fibroblast Primary Cells, Donor skin02 were mapped to the human genome using Pash.
Project News:
2012/5/31:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.1.xml' uploaded
alias: A08395-1.hg19.level.1.release.7
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Penis_Foreskin_Fibroblast_Primary_Cells.H3K4me1.skin02.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 7
NUMBER_OF_MAPPED_READS: 72,061,575
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 4
FINDPEAKS_SCORE: 0.0369
FINDPEAKS_PERCENTILE: 50
HOTSPOT_SCORE: 0.1535
HOTSPOT_PERCENTILE: 50
IROC_SCORE: 0.8799
IROC_PERCENTILE: 50
POISSON_SCORE: 0.3994
POISSON_PERCENTILE: 50
MAXIMUM_REPLICATE_CORRELATION: 0.97
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Penis_Foreskin_Fibroblast_Primary_Cells.H3K4me1.skin02.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 7
NUMBER_OF_MAPPED_READS: 72,061,575
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 4
FINDPEAKS_SCORE: 0.0369
FINDPEAKS_PERCENTILE: 50
HOTSPOT_SCORE: 0.1535
HOTSPOT_PERCENTILE: 50
IROC_SCORE: 0.8799
IROC_PERCENTILE: 50
POISSON_SCORE: 0.3994
POISSON_PERCENTILE: 50
MAXIMUM_REPLICATE_CORRELATION: 0.97
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