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Mapping of H9 Cell Line Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on the H9 Cell Line, Library DS18522 were mapped to the human genome using Pash.
Project News:
2012/5/30: ANALYSIS XML file 'uw.chromatin.accessibility.level.1.xml' uploaded
alias: DS18522.hg19.level.1.release.7
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UW.H9.ChromatinAccessibility.DS18522.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: Chromatin Accessibility GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 7 NUMBER_OF_MAPPED_READS: 30,147,140 NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 58 FINDPEAKS_SCORE: 0.2019 FINDPEAKS_PERCENTILE: 9 HOTSPOT_SCORE: 0.2112 HOTSPOT_PERCENTILE: 7 IROC_SCORE: 0.9889 IROC_PERCENTILE: 3 POISSON_SCORE: 0.3168 POISSON_PERCENTILE: 10 MAXIMUM_REPLICATE_CORRELATION: 0.99 |
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