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Mapping of H9 Cell Line Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on the H9 Cell Line, Library DS18522 were mapped to the human genome using Pash.


Project News:
2012/5/30:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.xml' uploaded



alias: DS18522.hg19.level.1.release.7
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.H9.ChromatinAccessibility.DS18522.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 7
NUMBER_OF_MAPPED_READS: 30,147,140
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 58
FINDPEAKS_SCORE: 0.2019
FINDPEAKS_PERCENTILE: 9
HOTSPOT_SCORE: 0.2112
HOTSPOT_PERCENTILE: 7
IROC_SCORE: 0.9889
IROC_PERCENTILE: 3
POISSON_SCORE: 0.3168
POISSON_PERCENTILE: 10
MAXIMUM_REPLICATE_CORRELATION: 0.99

 

 


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