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Mapping of Fetal Muscle Arm Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Muscle Arm, Donor H-24297, Library DS19646 were mapped to the human genome using Pash.
Project News:
2012/5/30:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.xml' uploaded
alias: DS19646.hg19.level.1.release.7
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24297.DS19646.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 7
NUMBER_OF_MAPPED_READS: 29,651,640
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 58
FINDPEAKS_SCORE: 0.3658
FINDPEAKS_PERCENTILE: 34
HOTSPOT_SCORE: 0.351
HOTSPOT_PERCENTILE: 31
IROC_SCORE: 0.9918
IROC_PERCENTILE: 24
POISSON_SCORE: 0.4248
POISSON_PERCENTILE: 31
MAXIMUM_REPLICATE_CORRELATION: 0.98
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Muscle_Arm.ChromatinAccessibility.H-24297.DS19646.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 7
NUMBER_OF_MAPPED_READS: 29,651,640
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 58
FINDPEAKS_SCORE: 0.3658
FINDPEAKS_PERCENTILE: 34
HOTSPOT_SCORE: 0.351
HOTSPOT_PERCENTILE: 31
IROC_SCORE: 0.9918
IROC_PERCENTILE: 24
POISSON_SCORE: 0.4248
POISSON_PERCENTILE: 31
MAXIMUM_REPLICATE_CORRELATION: 0.98
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