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Mapping of Fetal Renal Pelvis Right Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Renal Pelvis Right, Donor H-24169, Library DS18961 were mapped to the human genome using Pash.


Project News:
2012/5/3:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.xml' uploaded



alias: DS18961.hg19.level.1.release.6
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Renal_Pelvis_Right.ChromatinAccessibility.H-24169.DS18961.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 6
NUMBER_OF_MAPPED_READS: 26,852,213
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 63
FINDPEAKS_SCORE: 0.3824
FINDPEAKS_PERCENTILE: 52
HOTSPOT_SCORE: 0.3761
HOTSPOT_PERCENTILE: 52
IROC_SCORE: 0.9923
IROC_PERCENTILE: 38
POISSON_SCORE: 0.4452
POISSON_PERCENTILE: 51
MAXIMUM_REPLICATE_CORRELATION: 0.97

 

 


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