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Mapping of Fetal Intestine Large Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Intestine Large, Donor H-23744, Library DS17094 were mapped to the human genome using Pash.
Project News:
2012/5/3:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.xml' uploaded
alias: DS17094.hg19.level.1.release.6
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23744.DS17094.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 6
NUMBER_OF_MAPPED_READS: 35,367,475
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 63
FINDPEAKS_SCORE: 0.3307
FINDPEAKS_PERCENTILE: 33
HOTSPOT_SCORE: 0.3256
HOTSPOT_PERCENTILE: 35
IROC_SCORE: 0.9954
IROC_PERCENTILE: 81
POISSON_SCORE: 0.3898
POISSON_PERCENTILE: 21
MAXIMUM_REPLICATE_CORRELATION: 1.0
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23744.DS17094.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 6
NUMBER_OF_MAPPED_READS: 35,367,475
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 63
FINDPEAKS_SCORE: 0.3307
FINDPEAKS_PERCENTILE: 33
HOTSPOT_SCORE: 0.3256
HOTSPOT_PERCENTILE: 35
IROC_SCORE: 0.9954
IROC_PERCENTILE: 81
POISSON_SCORE: 0.3898
POISSON_PERCENTILE: 21
MAXIMUM_REPLICATE_CORRELATION: 1.0
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