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Raw Signal Density Graphs of H1 Derived Mesenchymal Stem Cells Histone H3K4ac ChIP-Seq Data
Illumina Histone H3K4ac ChIP-Seq read mappings from the H1 Derived Mesenchymal Stem Cells, Library AK274, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/4/12:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4ac.MSC.01.01.hg19.level.2.release.6
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_Derived_Mesenchymal_Stem_Cells.H3K4ac.AK274.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 6
BROWSER_TRACK_NAME: HDMSC H3K4ac 74
BROWSER_TRACK_DESCRIPTION: UCSD H1 Derived Mesenchymal Stem Cells Histone H3K4ac Library AK274 EA Release 6
NUMBER_OF_MAPPED_READS: 35,784,780
NUMBER_OF_H3K4ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.1241
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.3316
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.9614
IROC_PERCENTILE: 100
POISSON_SCORE: 0.3714
POISSON_PERCENTILE: 67
MAXIMUM_REPLICATE_CORRELATION: 0.93
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_Derived_Mesenchymal_Stem_Cells.H3K4ac.AK274.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 6
BROWSER_TRACK_NAME: HDMSC H3K4ac 74
BROWSER_TRACK_DESCRIPTION: UCSD H1 Derived Mesenchymal Stem Cells Histone H3K4ac Library AK274 EA Release 6
NUMBER_OF_MAPPED_READS: 35,784,780
NUMBER_OF_H3K4ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 3
FINDPEAKS_SCORE: 0.1241
FINDPEAKS_PERCENTILE: 67
HOTSPOT_SCORE: 0.3316
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.9614
IROC_PERCENTILE: 100
POISSON_SCORE: 0.3714
POISSON_PERCENTILE: 67
MAXIMUM_REPLICATE_CORRELATION: 0.93
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