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Raw Signal Density Graphs of H1 Derived Neuronal Progenitor Cultured Cells ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from the H1 Derived Neuronal Progenitor Cultured Cells, Library AK222, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/4/12:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.Input.NPC.03.01.hg19.level.2.release.6
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.Input.AK222.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 6
BROWSER_TRACK_NAME: HDNP Input 22
BROWSER_TRACK_DESCRIPTION: UCSD H1 Derived Neuronal Progenitor Cultured Cells ChIP-Seq Input Library AK222 EA Release 6
NUMBER_OF_MAPPED_READS: 38,921,154
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 15
FINDPEAKS_SCORE: 0.0248
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.0215
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9865
IROC_PERCENTILE: 47
POISSON_SCORE: 0.0609
POISSON_PERCENTILE: 67
MAXIMUM_REPLICATE_CORRELATION: 0.47
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.Input.AK222.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 6
BROWSER_TRACK_NAME: HDNP Input 22
BROWSER_TRACK_DESCRIPTION: UCSD H1 Derived Neuronal Progenitor Cultured Cells ChIP-Seq Input Library AK222 EA Release 6
NUMBER_OF_MAPPED_READS: 38,921,154
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 15
FINDPEAKS_SCORE: 0.0248
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.0215
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9865
IROC_PERCENTILE: 47
POISSON_SCORE: 0.0609
POISSON_PERCENTILE: 67
MAXIMUM_REPLICATE_CORRELATION: 0.47
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