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Raw Signal Density Graphs of H9 Cell Line Histone H2A.Z ChIP-Seq Data
Illumina Histone H2A.Z ChIP-Seq read mappings from the H9 Cell Line, Library SK532, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/4/12:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H2A.Z.hESC.H9.01.01.hg19.level.2.release.6
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H9.H2A.Z.SK532.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 6
BROWSER_TRACK_NAME: H9 H2A.Z 32
BROWSER_TRACK_DESCRIPTION: UCSD H9 Cell Line Histone H2A.Z Library SK532 EA Release 6
NUMBER_OF_MAPPED_READS: 51,808,653
NUMBER_OF_H2A.Z_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 6
FINDPEAKS_SCORE: 0.0318
FINDPEAKS_PERCENTILE: 17
HOTSPOT_SCORE: 0.114
HOTSPOT_PERCENTILE: 17
IROC_SCORE: 0.8787
IROC_PERCENTILE: 50
POISSON_SCORE: 0.2153
POISSON_PERCENTILE: 17
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H9.H2A.Z.SK532.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 6
BROWSER_TRACK_NAME: H9 H2A.Z 32
BROWSER_TRACK_DESCRIPTION: UCSD H9 Cell Line Histone H2A.Z Library SK532 EA Release 6
NUMBER_OF_MAPPED_READS: 51,808,653
NUMBER_OF_H2A.Z_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 6
FINDPEAKS_SCORE: 0.0318
FINDPEAKS_PERCENTILE: 17
HOTSPOT_SCORE: 0.114
HOTSPOT_PERCENTILE: 17
IROC_SCORE: 0.8787
IROC_PERCENTILE: 50
POISSON_SCORE: 0.2153
POISSON_PERCENTILE: 17
MAXIMUM_REPLICATE_CORRELATION: NA
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