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Mapping of H1 Derived Neuronal Progenitor Cultured Cells ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on H1 Derived Neuronal Progenitor Cultured Cells, Library AK222, were mapped to the human genome using Pash.


Project News:
2012/4/12:
ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded



alias: renlab.Input.NPC.03.01.hg19.level.1.release.6
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.Input.AK222.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 6
NUMBER_OF_MAPPED_READS: 38,921,154
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 15
FINDPEAKS_SCORE: 0.0248
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.0215
HOTSPOT_PERCENTILE: 67
IROC_SCORE: 0.9865
IROC_PERCENTILE: 47
POISSON_SCORE: 0.0609
POISSON_PERCENTILE: 67
MAXIMUM_REPLICATE_CORRELATION: 0.47

 

 


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