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Mapping of H1 BMP4 Derived Mesendoderm Cultured Cells Histone H2BK5ac ChIP-Seq Data
Illumina reads produced by Histone H2BK5ac ChIP-Seq on H1 BMP4 Derived Mesendoderm Cultured Cells, Library AK171, were mapped to the human genome using Pash.
Project News:
2012/4/12:
ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded
alias: renlab.H2BK5ac.BMP4M.02.01.hg19.level.1.release.6
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H2BK5ac.AK171.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 6
NUMBER_OF_MAPPED_READS: 76,952,161
NUMBER_OF_H2BK5ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 7
FINDPEAKS_SCORE: 0.0546
FINDPEAKS_PERCENTILE: 43
HOTSPOT_SCORE: 0.095
HOTSPOT_PERCENTILE: 29
IROC_SCORE: 0.8959
IROC_PERCENTILE: 57
POISSON_SCORE: 0.2373
POISSON_PERCENTILE: 43
MAXIMUM_REPLICATE_CORRELATION: 0.96
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H2BK5ac.AK171.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 6
NUMBER_OF_MAPPED_READS: 76,952,161
NUMBER_OF_H2BK5ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 7
FINDPEAKS_SCORE: 0.0546
FINDPEAKS_PERCENTILE: 43
HOTSPOT_SCORE: 0.095
HOTSPOT_PERCENTILE: 29
IROC_SCORE: 0.8959
IROC_PERCENTILE: 57
POISSON_SCORE: 0.2373
POISSON_PERCENTILE: 43
MAXIMUM_REPLICATE_CORRELATION: 0.96
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