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Raw Signal Density Graphs of Duodenum Smooth Muscle Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from Duodenum Smooth Muscle, Donor Donor 174 REMC 28, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/4/12:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 988-DNA_Lib 988.hg19.level.2.release.6
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Duodenum_Smooth_Muscle.H3K4me1.Donor_174_REMC_28.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 6
BROWSER_TRACK_NAME: DSM H3K4me1 74 88
BROWSER_TRACK_DESCRIPTION: BI Duodenum Smooth Muscle Histone H3K4me1 Donor 174 REMC 28 Library DNA_Lib 988 EA Release 6
NUMBER_OF_MAPPED_READS: 18,291,333
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.3565
FINDPEAKS_PERCENTILE: 79
HOTSPOT_SCORE: 0.4185
HOTSPOT_PERCENTILE: 93
IROC_SCORE: 0.9803
IROC_PERCENTILE: 79
POISSON_SCORE: 0.5624
POISSON_PERCENTILE: 93
MAXIMUM_REPLICATE_CORRELATION: 0.78
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Duodenum_Smooth_Muscle.H3K4me1.Donor_174_REMC_28.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 6
BROWSER_TRACK_NAME: DSM H3K4me1 74 88
BROWSER_TRACK_DESCRIPTION: BI Duodenum Smooth Muscle Histone H3K4me1 Donor 174 REMC 28 Library DNA_Lib 988 EA Release 6
NUMBER_OF_MAPPED_READS: 18,291,333
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.3565
FINDPEAKS_PERCENTILE: 79
HOTSPOT_SCORE: 0.4185
HOTSPOT_PERCENTILE: 93
IROC_SCORE: 0.9803
IROC_PERCENTILE: 79
POISSON_SCORE: 0.5624
POISSON_PERCENTILE: 93
MAXIMUM_REPLICATE_CORRELATION: 0.78
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