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Raw Signal Density Graphs of Colonic Mucosa Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from Colonic Mucosa, Donor 155, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2012/4/12:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 363-DNA_Lib 363-DNA_Lib 363-DNA_Lib 363.hg19.level.2.release.6
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Colonic_Mucosa.H3K4me1.155.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 6
BROWSER_TRACK_NAME: CM H3K4me1 55 63
BROWSER_TRACK_DESCRIPTION: BI Colonic Mucosa Histone H3K4me1 Donor 155 Library DNA_Lib 363 EA Release 6
NUMBER_OF_MAPPED_READS: 21,243,914
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.1047
FINDPEAKS_PERCENTILE: 43
HOTSPOT_SCORE: 0.2145
HOTSPOT_PERCENTILE: 36
IROC_SCORE: 0.9106
IROC_PERCENTILE: 43
POISSON_SCORE: 0.3405
POISSON_PERCENTILE: 29
MAXIMUM_REPLICATE_CORRELATION: 0.89
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Colonic_Mucosa.H3K4me1.155.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 6
BROWSER_TRACK_NAME: CM H3K4me1 55 63
BROWSER_TRACK_DESCRIPTION: BI Colonic Mucosa Histone H3K4me1 Donor 155 Library DNA_Lib 363 EA Release 6
NUMBER_OF_MAPPED_READS: 21,243,914
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.1047
FINDPEAKS_PERCENTILE: 43
HOTSPOT_SCORE: 0.2145
HOTSPOT_PERCENTILE: 36
IROC_SCORE: 0.9106
IROC_PERCENTILE: 43
POISSON_SCORE: 0.3405
POISSON_PERCENTILE: 29
MAXIMUM_REPLICATE_CORRELATION: 0.89
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