|
|
| Home | Browser | Tools | Log Out |
Help
|
Mapping of Duodenum Smooth Muscle Histone H3K4me1 ChIP-Seq Data
Illumina reads produced by Histone H3K4me1 ChIP-Seq on Duodenum Smooth Muscle, Donor Donor 174 REMC 28, were mapped to the human genome using Pash.
Project News:
2012/4/12:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: DNA_Lib 988-DNA_Lib 988.hg19.level.1.release.6
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Duodenum_Smooth_Muscle.H3K4me1.Donor_174_REMC_28.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 6
NUMBER_OF_MAPPED_READS: 18,291,333
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.3565
FINDPEAKS_PERCENTILE: 79
HOTSPOT_SCORE: 0.4185
HOTSPOT_PERCENTILE: 93
IROC_SCORE: 0.9803
IROC_PERCENTILE: 79
POISSON_SCORE: 0.5624
POISSON_PERCENTILE: 93
MAXIMUM_REPLICATE_CORRELATION: 0.78
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Duodenum_Smooth_Muscle.H3K4me1.Donor_174_REMC_28.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 6
NUMBER_OF_MAPPED_READS: 18,291,333
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14
FINDPEAKS_SCORE: 0.3565
FINDPEAKS_PERCENTILE: 79
HOTSPOT_SCORE: 0.4185
HOTSPOT_PERCENTILE: 93
IROC_SCORE: 0.9803
IROC_PERCENTILE: 79
POISSON_SCORE: 0.5624
POISSON_PERCENTILE: 93
MAXIMUM_REPLICATE_CORRELATION: 0.78
|
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Code is available
free for academic use.
|
|
|
© 2001-2013 Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030, 713-798-5433) |
|