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Raw Signal Density Graphs of CD4 Naive Primary Cells ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from CD4 Naive Primary Cells, Donor Donor 101 8 pooled leukopaks Jan 20 2011, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19: ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 527-DNA_Lib 527-DNA_Lib 527.hg19.level.2.release.5
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: BI.CD4_Naive_Primary_Cells.Input.Donor_101_8_pooled_leukopaks_Jan_20_2011.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 5 BROWSER_TRACK_NAME: CD4N Input 01 27 BROWSER_TRACK_DESCRIPTION: BI CD4 Naive Primary Cells ChIP-Seq Input Donor 101 8 pooled leukopaks Jan 20 2011 Library DNA_Lib 527 EA Release 5 NUMBER_OF_MAPPED_READS: 29,918,313 NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56 FINDPEAKS_SCORE: 0.0061 FINDPEAKS_PERCENTILE: 69 HOTSPOT_SCORE: 0.0162 HOTSPOT_PERCENTILE: 59 IROC_SCORE: 0.0 IROC_PERCENTILE: 33 POISSON_SCORE: 0.0683 POISSON_PERCENTILE: 64 MAXIMUM_REPLICATE_CORRELATION: 0.95 |
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