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Raw Signal Density Graphs of iPS-20b Cell Line ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from the iPS-20b Cell Line, Library DNA_Lib 350, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 350-DNA_Lib 350-DNA_Lib 350-DNA_Lib 350.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.iPS-20b.Input.DNA_Lib_350.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: iPS20b Input 50
BROWSER_TRACK_DESCRIPTION: BI iPS-20b Cell Line ChIP-Seq Input Library DNA_Lib 350 EA Release 5
NUMBER_OF_MAPPED_READS: 34,090,424
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0048
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.0106
HOTSPOT_PERCENTILE: 52
IROC_SCORE: 0.0
IROC_PERCENTILE: 33
POISSON_SCORE: 0.0545
POISSON_PERCENTILE: 49
MAXIMUM_REPLICATE_CORRELATION: 0.91
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.iPS-20b.Input.DNA_Lib_350.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: iPS20b Input 50
BROWSER_TRACK_DESCRIPTION: BI iPS-20b Cell Line ChIP-Seq Input Library DNA_Lib 350 EA Release 5
NUMBER_OF_MAPPED_READS: 34,090,424
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0048
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.0106
HOTSPOT_PERCENTILE: 52
IROC_SCORE: 0.0
IROC_PERCENTILE: 33
POISSON_SCORE: 0.0545
POISSON_PERCENTILE: 49
MAXIMUM_REPLICATE_CORRELATION: 0.91
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