|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Raw Signal Density Graphs of Brain Substantia Nigra ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from Brain Substantia Nigra, Donor 149, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 560-DNA_Lib 560-DNA_Lib 560.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Brain_Substantia_Nigra.Input.149.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: BSN Input 49 60
BROWSER_TRACK_DESCRIPTION: BI Brain Substantia Nigra ChIP-Seq Input Donor 149 Library DNA_Lib 560 EA Release 5
NUMBER_OF_MAPPED_READS: 19,006,947
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0068
FINDPEAKS_PERCENTILE: 79
HOTSPOT_SCORE: 0.0343
HOTSPOT_PERCENTILE: 75
IROC_SCORE: 0.9668
IROC_PERCENTILE: 52
POISSON_SCORE: 0.0698
POISSON_PERCENTILE: 67
MAXIMUM_REPLICATE_CORRELATION: 0.92
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Brain_Substantia_Nigra.Input.149.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: BSN Input 49 60
BROWSER_TRACK_DESCRIPTION: BI Brain Substantia Nigra ChIP-Seq Input Donor 149 Library DNA_Lib 560 EA Release 5
NUMBER_OF_MAPPED_READS: 19,006,947
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0068
FINDPEAKS_PERCENTILE: 79
HOTSPOT_SCORE: 0.0343
HOTSPOT_PERCENTILE: 75
IROC_SCORE: 0.9668
IROC_PERCENTILE: 52
POISSON_SCORE: 0.0698
POISSON_PERCENTILE: 67
MAXIMUM_REPLICATE_CORRELATION: 0.92
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |