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Raw Signal Density Graphs of CD4 Memory Primary Cells Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from CD4 Memory Primary Cells, Donor Donor 100 7 pooled leukopaks Jan 7 2011, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 542-DNA_Lib 542-DNA_Lib 542.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD4_Memory_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: CD4M H3K4me1 00 42
BROWSER_TRACK_DESCRIPTION: BI CD4 Memory Primary Cells Histone H3K4me1 Donor 100 7 pooled leukopaks Jan 7 2011 Library DNA_Lib 542 EA Release 5
NUMBER_OF_MAPPED_READS: 21,077,683
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.4457
FINDPEAKS_PERCENTILE: 87
HOTSPOT_SCORE: 0.4449
HOTSPOT_PERCENTILE: 83
IROC_SCORE: 0.9983
IROC_PERCENTILE: 94
POISSON_SCORE: 0.5562
POISSON_PERCENTILE: 81
MAXIMUM_REPLICATE_CORRELATION: 0.97
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD4_Memory_Primary_Cells.H3K4me1.Donor_100_7_pooled_leukopaks_Jan_7_2011.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: CD4M H3K4me1 00 42
BROWSER_TRACK_DESCRIPTION: BI CD4 Memory Primary Cells Histone H3K4me1 Donor 100 7 pooled leukopaks Jan 7 2011 Library DNA_Lib 542 EA Release 5
NUMBER_OF_MAPPED_READS: 21,077,683
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.4457
FINDPEAKS_PERCENTILE: 87
HOTSPOT_SCORE: 0.4449
HOTSPOT_PERCENTILE: 83
IROC_SCORE: 0.9983
IROC_PERCENTILE: 94
POISSON_SCORE: 0.5562
POISSON_PERCENTILE: 81
MAXIMUM_REPLICATE_CORRELATION: 0.97
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