|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Raw Signal Density Graphs of iPS-20b Cell Line ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from the iPS-20b Cell Line, Library DNA_Lib 440, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 440-DNA_Lib 440-DNA_Lib 440-DNA_Lib 440.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.iPS-20b.Input.DNA_Lib_440.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: iPS20b Input 40
BROWSER_TRACK_DESCRIPTION: BI iPS-20b Cell Line ChIP-Seq Input Library DNA_Lib 440 EA Release 5
NUMBER_OF_MAPPED_READS: 34,337,278
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0053
FINDPEAKS_PERCENTILE: 52
HOTSPOT_SCORE: 0.0046
HOTSPOT_PERCENTILE: 25
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.0335
POISSON_PERCENTILE: 23
MAXIMUM_REPLICATE_CORRELATION: 0.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.iPS-20b.Input.DNA_Lib_440.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: iPS20b Input 40
BROWSER_TRACK_DESCRIPTION: BI iPS-20b Cell Line ChIP-Seq Input Library DNA_Lib 440 EA Release 5
NUMBER_OF_MAPPED_READS: 34,337,278
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0053
FINDPEAKS_PERCENTILE: 52
HOTSPOT_SCORE: 0.0046
HOTSPOT_PERCENTILE: 25
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.0335
POISSON_PERCENTILE: 23
MAXIMUM_REPLICATE_CORRELATION: 0.9
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |