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Raw Signal Density Graphs of CD8 Naive Primary Cells Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from CD8 Naive Primary Cells, Donor Donor 100 7 pooled leukopaks Jan 7 2011, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 665-DNA_Lib 665-DNA_Lib 665.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD8_Naive_Primary_Cells.H3K4me3.Donor_100_7_pooled_leukopaks_Jan_7_2011.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: CD8N H3K4me3 00 65
BROWSER_TRACK_DESCRIPTION: BI CD8 Naive Primary Cells Histone H3K4me3 Donor 100 7 pooled leukopaks Jan 7 2011 Library DNA_Lib 665 EA Release 5
NUMBER_OF_MAPPED_READS: 15,619,994
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.1362
FINDPEAKS_PERCENTILE: 20
HOTSPOT_SCORE: 0.2022
HOTSPOT_PERCENTILE: 28
IROC_SCORE: 0.9979
IROC_PERCENTILE: 41
POISSON_SCORE: 0.2287
POISSON_PERCENTILE: 19
MAXIMUM_REPLICATE_CORRELATION: 0.93
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD8_Naive_Primary_Cells.H3K4me3.Donor_100_7_pooled_leukopaks_Jan_7_2011.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: CD8N H3K4me3 00 65
BROWSER_TRACK_DESCRIPTION: BI CD8 Naive Primary Cells Histone H3K4me3 Donor 100 7 pooled leukopaks Jan 7 2011 Library DNA_Lib 665 EA Release 5
NUMBER_OF_MAPPED_READS: 15,619,994
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.1362
FINDPEAKS_PERCENTILE: 20
HOTSPOT_SCORE: 0.2022
HOTSPOT_PERCENTILE: 28
IROC_SCORE: 0.9979
IROC_PERCENTILE: 41
POISSON_SCORE: 0.2287
POISSON_PERCENTILE: 19
MAXIMUM_REPLICATE_CORRELATION: 0.93
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