|
|
| Home | Browser | Tools | Log Out |
Help
|
Genboree Home |
Raw Signal Density Graphs of Stomach Mucosa Histone H3K36me3 ChIP-Seq Data
Illumina Histone H3K36me3 ChIP-Seq read mappings from Stomach Mucosa, Donor 157, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 319-DNA_Lib 319-DNA_Lib 319-DNA_Lib 319.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Stomach_Mucosa.H3K36me3.157.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: SM H3K36me3 57 19
BROWSER_TRACK_DESCRIPTION: BI Stomach Mucosa Histone H3K36me3 Donor 157 Library DNA_Lib 319 EA Release 5
NUMBER_OF_MAPPED_READS: 33,363,481
NUMBER_OF_H3K36me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 49
FINDPEAKS_SCORE: 0.0049
FINDPEAKS_PERCENTILE: 4
HOTSPOT_SCORE: 0.0598
HOTSPOT_PERCENTILE: 4
IROC_SCORE: 0.6016
IROC_PERCENTILE: 2
POISSON_SCORE: 0.1785
POISSON_PERCENTILE: 6
MAXIMUM_REPLICATE_CORRELATION: 0.8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Stomach_Mucosa.H3K36me3.157.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: SM H3K36me3 57 19
BROWSER_TRACK_DESCRIPTION: BI Stomach Mucosa Histone H3K36me3 Donor 157 Library DNA_Lib 319 EA Release 5
NUMBER_OF_MAPPED_READS: 33,363,481
NUMBER_OF_H3K36me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 49
FINDPEAKS_SCORE: 0.0049
FINDPEAKS_PERCENTILE: 4
HOTSPOT_SCORE: 0.0598
HOTSPOT_PERCENTILE: 4
IROC_SCORE: 0.6016
IROC_PERCENTILE: 2
POISSON_SCORE: 0.1785
POISSON_PERCENTILE: 6
MAXIMUM_REPLICATE_CORRELATION: 0.8
|
© 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory (400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030) |