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Raw Signal Density Graphs of CD4 Memory Primary Cells Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from CD4 Memory Primary Cells, Donor Donor 100 7 pooled leukopaks Jan 7 2011, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19: ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 536-DNA_Lib 536-DNA_Lib 536.hg19.level.2.release.5
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: BI.CD4_Memory_Primary_Cells.H3K4me3.Donor_100_7_pooled_leukopaks_Jan_7_2011.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 5 BROWSER_TRACK_NAME: CD4M H3K4me3 00 36 BROWSER_TRACK_DESCRIPTION: BI CD4 Memory Primary Cells Histone H3K4me3 Donor 100 7 pooled leukopaks Jan 7 2011 Library DNA_Lib 536 EA Release 5 NUMBER_OF_MAPPED_READS: 28,213,970 NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54 FINDPEAKS_SCORE: 0.0623 FINDPEAKS_PERCENTILE: 6 HOTSPOT_SCORE: 0.0994 HOTSPOT_PERCENTILE: 4 IROC_SCORE: 0.9791 IROC_PERCENTILE: 19 POISSON_SCORE: 0.1401 POISSON_PERCENTILE: 4 MAXIMUM_REPLICATE_CORRELATION: 0.87 |
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