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Raw Signal Density Graphs of CD4 Naive Primary Cells Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from CD4 Naive Primary Cells, Donor Donor 101 8 pooled leukopaks Jan 20 2011, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 528-DNA_Lib 528-DNA_Lib 528.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD4_Naive_Primary_Cells.H3K4me1.Donor_101_8_pooled_leukopaks_Jan_20_2011.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: CD4N H3K4me1 01 28
BROWSER_TRACK_DESCRIPTION: BI CD4 Naive Primary Cells Histone H3K4me1 Donor 101 8 pooled leukopaks Jan 20 2011 Library DNA_Lib 528 EA Release 5
NUMBER_OF_MAPPED_READS: 15,494,536
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.2828
FINDPEAKS_PERCENTILE: 59
HOTSPOT_SCORE: 0.3245
HOTSPOT_PERCENTILE: 48
IROC_SCORE: 0.9926
IROC_PERCENTILE: 74
POISSON_SCORE: 0.3983
POISSON_PERCENTILE: 26
MAXIMUM_REPLICATE_CORRELATION: 0.88
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD4_Naive_Primary_Cells.H3K4me1.Donor_101_8_pooled_leukopaks_Jan_20_2011.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: CD4N H3K4me1 01 28
BROWSER_TRACK_DESCRIPTION: BI CD4 Naive Primary Cells Histone H3K4me1 Donor 101 8 pooled leukopaks Jan 20 2011 Library DNA_Lib 528 EA Release 5
NUMBER_OF_MAPPED_READS: 15,494,536
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.2828
FINDPEAKS_PERCENTILE: 59
HOTSPOT_SCORE: 0.3245
HOTSPOT_PERCENTILE: 48
IROC_SCORE: 0.9926
IROC_PERCENTILE: 74
POISSON_SCORE: 0.3983
POISSON_PERCENTILE: 26
MAXIMUM_REPLICATE_CORRELATION: 0.88
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