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Raw Signal Density Graphs of Stomach Smooth Muscle ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from Stomach Smooth Muscle, Donor 161, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 381-DNA_Lib 381-DNA_Lib 381-DNA_Lib 381.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Stomach_Smooth_Muscle.Input.161.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: SSM Input 61 81
BROWSER_TRACK_DESCRIPTION: BI Stomach Smooth Muscle ChIP-Seq Input Donor 161 Library DNA_Lib 381 EA Release 5
NUMBER_OF_MAPPED_READS: 22,407,956
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0064
FINDPEAKS_PERCENTILE: 75
HOTSPOT_SCORE: 0.0344
HOTSPOT_PERCENTILE: 77
IROC_SCORE: 0.9666
IROC_PERCENTILE: 50
POISSON_SCORE: 0.0799
POISSON_PERCENTILE: 75
MAXIMUM_REPLICATE_CORRELATION: 0.65
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Stomach_Smooth_Muscle.Input.161.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: SSM Input 61 81
BROWSER_TRACK_DESCRIPTION: BI Stomach Smooth Muscle ChIP-Seq Input Donor 161 Library DNA_Lib 381 EA Release 5
NUMBER_OF_MAPPED_READS: 22,407,956
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0064
FINDPEAKS_PERCENTILE: 75
HOTSPOT_SCORE: 0.0344
HOTSPOT_PERCENTILE: 77
IROC_SCORE: 0.9666
IROC_PERCENTILE: 50
POISSON_SCORE: 0.0799
POISSON_PERCENTILE: 75
MAXIMUM_REPLICATE_CORRELATION: 0.65
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