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Raw Signal Density Graphs of Brain Substantia Nigra Histone H3K27me3 ChIP-Seq Data
Illumina Histone H3K27me3 ChIP-Seq read mappings from Brain Substantia Nigra, Donor 149, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 559-DNA_Lib 559-DNA_Lib 559.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Brain_Substantia_Nigra.H3K27me3.149.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: BSN H3K27me3 49 59
BROWSER_TRACK_DESCRIPTION: BI Brain Substantia Nigra Histone H3K27me3 Donor 149 Library DNA_Lib 559 EA Release 5
NUMBER_OF_MAPPED_READS: 19,777,120
NUMBER_OF_H3K27me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 49
FINDPEAKS_SCORE: 0.0189
FINDPEAKS_PERCENTILE: 39
HOTSPOT_SCORE: 0.1104
HOTSPOT_PERCENTILE: 43
IROC_SCORE: 0.686
IROC_PERCENTILE: 33
POISSON_SCORE: 0.2658
POISSON_PERCENTILE: 45
MAXIMUM_REPLICATE_CORRELATION: 0.86
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Brain_Substantia_Nigra.H3K27me3.149.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: BSN H3K27me3 49 59
BROWSER_TRACK_DESCRIPTION: BI Brain Substantia Nigra Histone H3K27me3 Donor 149 Library DNA_Lib 559 EA Release 5
NUMBER_OF_MAPPED_READS: 19,777,120
NUMBER_OF_H3K27me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 49
FINDPEAKS_SCORE: 0.0189
FINDPEAKS_PERCENTILE: 39
HOTSPOT_SCORE: 0.1104
HOTSPOT_PERCENTILE: 43
IROC_SCORE: 0.686
IROC_PERCENTILE: 33
POISSON_SCORE: 0.2658
POISSON_PERCENTILE: 45
MAXIMUM_REPLICATE_CORRELATION: 0.86
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