Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Raw Signal Density Graphs of CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells, Donor Donor 62, were processed into density graphs of raw signal representing the aligned read density.


Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded



alias: DNA_Lib 740-DNA_Lib 740-DNA_Lib 740-DNA_Lib 740.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.CD4+_CD25-_IL17+_PMA-Ionomcyin_stimulated_Th17_Primary_Cells.Input.Donor_62.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: CCIPsT Input 62 40
BROWSER_TRACK_DESCRIPTION: BI CD4+ CD25- IL17+ PMA-Ionomcyin stimulated Th17 Primary Cells ChIP-Seq Input Donor 62 Library DNA_Lib 740 EA Release 5
NUMBER_OF_MAPPED_READS: 32,550,112
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0054
FINDPEAKS_PERCENTILE: 56
HOTSPOT_SCORE: 0.0255
HOTSPOT_PERCENTILE: 70
IROC_SCORE: 0.0
IROC_PERCENTILE: 33
POISSON_SCORE: 0.0681
POISSON_PERCENTILE: 62
MAXIMUM_REPLICATE_CORRELATION: NA

 

 


Bioinformatics Research Laboratory
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Free open source code is available here.
 
© 2001-2022 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)
Questions or comments?