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Raw Signal Density Graphs of Duodenum Smooth Muscle ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from Duodenum Smooth Muscle, Donor 160, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 461-DNA_Lib 461-DNA_Lib 461-DNA_Lib 461.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Duodenum_Smooth_Muscle.Input.160.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: DSM Input 60 61
BROWSER_TRACK_DESCRIPTION: BI Duodenum Smooth Muscle ChIP-Seq Input Donor 160 Library DNA_Lib 461 EA Release 5
NUMBER_OF_MAPPED_READS: 55,001,186
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0048
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.0026
HOTSPOT_PERCENTILE: 3
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.0216
POISSON_PERCENTILE: 10
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Duodenum_Smooth_Muscle.Input.160.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: DSM Input 60 61
BROWSER_TRACK_DESCRIPTION: BI Duodenum Smooth Muscle ChIP-Seq Input Donor 160 Library DNA_Lib 461 EA Release 5
NUMBER_OF_MAPPED_READS: 55,001,186
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0048
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.0026
HOTSPOT_PERCENTILE: 3
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.0216
POISSON_PERCENTILE: 10
MAXIMUM_REPLICATE_CORRELATION: NA
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