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Mapping of iPS-20b Cell Line ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on the iPS-20b Cell Line, Library DNA_Lib 440, were mapped to the human genome using Pash.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: DNA_Lib 440-DNA_Lib 440-DNA_Lib 440-DNA_Lib 440.hg19.level.1.release.5
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.iPS-20b.Input.DNA_Lib_440.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 34,337,278
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0053
FINDPEAKS_PERCENTILE: 52
HOTSPOT_SCORE: 0.0046
HOTSPOT_PERCENTILE: 25
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.0335
POISSON_PERCENTILE: 23
MAXIMUM_REPLICATE_CORRELATION: 0.9
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.iPS-20b.Input.DNA_Lib_440.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 34,337,278
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0053
FINDPEAKS_PERCENTILE: 52
HOTSPOT_SCORE: 0.0046
HOTSPOT_PERCENTILE: 25
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.0335
POISSON_PERCENTILE: 23
MAXIMUM_REPLICATE_CORRELATION: 0.9
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