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Mapping of iPS-20b Cell Line Histone H3K4me1 ChIP-Seq Data
Illumina reads produced by Histone H3K4me1 ChIP-Seq on the iPS-20b Cell Line, Library Lib:MC:20100211:03--ChIP:MC:20100208:03:hiPS-20b:H3K4Me1, were mapped to the human genome using Pash.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: Lib:MC:20100211:03--ChIP:MC:20100208:03:hiPS-20b:H3K4Me1.hg19.level.1.release.5
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.iPS-20b.H3K4me1.Lib_MC_20100211_03--ChIP_MC_20100208_03_hiPS-20b_H3K4Me1.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 28,644,493
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.0184
FINDPEAKS_PERCENTILE: 7
HOTSPOT_SCORE: 0.1587
HOTSPOT_PERCENTILE: 7
IROC_SCORE: 0.7904
IROC_PERCENTILE: 7
POISSON_SCORE: 0.3311
POISSON_PERCENTILE: 7
MAXIMUM_REPLICATE_CORRELATION: 0.87
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.iPS-20b.H3K4me1.Lib_MC_20100211_03--ChIP_MC_20100208_03_hiPS-20b_H3K4Me1.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 28,644,493
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.0184
FINDPEAKS_PERCENTILE: 7
HOTSPOT_SCORE: 0.1587
HOTSPOT_PERCENTILE: 7
IROC_SCORE: 0.7904
IROC_PERCENTILE: 7
POISSON_SCORE: 0.3311
POISSON_PERCENTILE: 7
MAXIMUM_REPLICATE_CORRELATION: 0.87
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