Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Mapping of hESC Derived CD184+ Endoderm Cultured Cells ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on hESC Derived CD184+ Endoderm Cultured Cells, Donor DNA_Lib 264, were mapped to the human genome using Pash.


Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded



alias: DNA_Lib 264-DNA_Lib 264-DNA_Lib 264-DNA_Lib 264.hg19.level.1.release.5
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.hESC_Derived_CD184+_Endoderm_Cultured_Cells.Input.DNA_Lib_264.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 29,970,166
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56
FINDPEAKS_SCORE: 0.0055
FINDPEAKS_PERCENTILE: 57
HOTSPOT_SCORE: 0.0082
HOTSPOT_PERCENTILE: 36
IROC_SCORE: 0.0
IROC_PERCENTILE: 33
POISSON_SCORE: 0.0474
POISSON_PERCENTILE: 41
MAXIMUM_REPLICATE_CORRELATION: 0.96

 

 


Bioinformatics Research Laboratory
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Free open source code is available here.
 
© 2001-2022 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)
Questions or comments?