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Mapping of Stomach Smooth Muscle ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on Stomach Smooth Muscle, Donor 161, were mapped to the human genome using Pash.
Project News:
2011/12/19: ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: DNA_Lib 381-DNA_Lib 381-DNA_Lib 381-DNA_Lib 381.hg19.level.1.release.5
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: BI.Stomach_Smooth_Muscle.Input.161.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 5 NUMBER_OF_MAPPED_READS: 22,407,956 NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 56 FINDPEAKS_SCORE: 0.0064 FINDPEAKS_PERCENTILE: 75 HOTSPOT_SCORE: 0.0344 HOTSPOT_PERCENTILE: 77 IROC_SCORE: 0.9666 IROC_PERCENTILE: 50 POISSON_SCORE: 0.0799 POISSON_PERCENTILE: 75 MAXIMUM_REPLICATE_CORRELATION: 0.65 |
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