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Mapping of ES-I3 Cell Line Histone H3K4me1 ChIP-Seq Data
Illumina reads produced by Histone H3K4me1 ChIP-Seq on the ES-I3 Cell Line, Library Lib:MC:20100211:02--ChIP:MC:20100208:02:hES I3 TESR:H3K4Me1, were mapped to the human genome using Pash.
Project News:
2011/12/19:
ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: Lib:MC:20100211:02--ChIP:MC:20100208:02:hES I3 TESR:H3K4Me1.hg19.level.1.release.5
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.ES-I3.H3K4me1.Lib_MC_20100211_02--ChIP_MC_20100208_02_hES_I3_TESR_H3K4Me1.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 26,339,982
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.2298
FINDPEAKS_PERCENTILE: 35
HOTSPOT_SCORE: 0.3286
HOTSPOT_PERCENTILE: 54
IROC_SCORE: 0.9465
IROC_PERCENTILE: 26
POISSON_SCORE: 0.5004
POISSON_PERCENTILE: 70
MAXIMUM_REPLICATE_CORRELATION: 0.85
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.ES-I3.H3K4me1.Lib_MC_20100211_02--ChIP_MC_20100208_02_hES_I3_TESR_H3K4Me1.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 26,339,982
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.2298
FINDPEAKS_PERCENTILE: 35
HOTSPOT_SCORE: 0.3286
HOTSPOT_PERCENTILE: 54
IROC_SCORE: 0.9465
IROC_PERCENTILE: 26
POISSON_SCORE: 0.5004
POISSON_PERCENTILE: 70
MAXIMUM_REPLICATE_CORRELATION: 0.85
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